![]() ![]() But if you don’t want to run scripts in terminal, a simple GUI is also offered to invoke those two Perl scripts and R script. So Perl scripts can be easily invoked from the terminal on Mac system. If you are using a Macintosh system, Perl should already be installed type “Perl –v” at the command line to ensure this is the case. Since "Mplot.R" has command line arguments and RStudio cannot access command line arguments, one way to run "Mplot.R" is to call it from command line, the other way is to use "MEGASAT_GUI" to invoke "Mplot.R". In order to run "Mplot.R", R interpreter needs to be installed in your computer. The script “MEGASAT_” and "MEGASAT_" uses no complicated library functions. We have used the latter in development and testing of MEGASAT, and recommend its use. If you don’t have Perl installed but still want to run the Perl scripts, here are the two main distributions for Windows: ActivePerl ( ) and Strawberry Perl ( ). If Perl is already installed in your computer, you can just click the Start button and go to your Perl interpreter to run the Perl scripts. In order to run "MEGASAT_GUI.jar", Java needs to be installed in your computer. ![]() "Mplot.R" can generate bar plots to display length distribution for each individual and each locus. MEGASAT_GUI is the graphical user interface for running those two Perl executable files (“MEGASAT_Genotype” and “MEGASAT_Update”) and the Rscript "Mplot.R". In this “MEGASAT_1.0 for Windows” folder, there are two Perl executable files,one executable Jar files and one R script. The R script in MEGASAT should work with any relatively recent version of R and have been tested with version 3.2.0. The GUI in MEGASAT should work with any relatively recent version of Java and have been tested with versions 1.6.0_65 and 1.8.0_40. The Perl scripts in MEGASAT should work with any relatively recent version of Perl and have been tested with versions 5.18.2 and 5.16.3. Please check back for release information about MEGASAT and updated documentation. This page is currently under development. ![]() 1 This page is currently under development. ![]()
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